Let us know if you figure anything out. I really don’t think the 44.1 vs. 48k thing has anything to do with it – we’re fighting the same problem and all of our audio is captured at 48k. Not imported, captured. Granted, the audio is a seperate file than the video, but that’s because it’s coming from a seperate source. I agree, it is frustrating. Sometimes the problem doesn’t hit until you’re exporting a quicktime – at which point it randomly switches up the audio on you. When you go back to the timeline to fix the audio: everything’s fine.
We simply don’t have the time to edit an entire program together, and then go back and proof the entire export – but that’s what it’s coming down to.
Nick