Well it sounds like you checked all the usual suspects. Are you sure it’s the same/correct fonts? (some of the letters look like they’re a pixel or two shorter)
I’ve had situations where its pretty much the same but it was something like Franklin Gothic xb OTC and i had something similar that after effects linked to. Also go and manually change the fonts. In that same troubled project, I would change the font like normal and the character window would show the correct font but the actual layer wouldn’t update until i changed it and changed it back.
have you tried opening the template in a new project? or clearing your cache and all that?