It would be best to write a script for randomizing the fill. The steps it executes could be:
-Use a loop to cycle through all shapes in the selected layer
-For each one, add a fill property if it doesn’t already exist (to the shapes, not the layer)
-Pick a random fill color from an array of predetermined colors
That last step would include something like:
var currentFill = //your shape's fill property
var redFill = [1,0,0,1];
var yellowFill = [1,1,0,1];
var orangeFill = [1,.5,0,1];
var fillList = [redFill, yellowFill, orangeFill];
var randomFill = fillList[Math.floor(Math.random()*fillList.length)];
currentFill = randomFill;