So Dave, this is my “fix”. I’m hoping that you (or other can improve upon it.
If I just set “Separate Fields” to OFF that mostly fixes my main strobing issue, but then the rest of the clip looks interlaced.
So what I am doing is in the project window I duplicate the video and then separate fields. Then in the comp I duplicate the clip. I replace it with the new video. THEN I mask of the problem area so just those show over the original clip.
There has to be a better way.