Are you seeing this in the Viewer or Canvas? Drop these clips into a sequence for playback, I have similar problems when I play RGB clips back in the Viewer, but they work fine in the Canvas.
There used to be an issue where you would get that kind of gamma shift on playback if you had the overlays on in the Canvas of FCP. Try turning those off if you have them on.
Also, you might try converting your RGB sequence to YUV using FCP rather than some other editor (like After Effects). If I need to take a DVCProHD clip into After Effects (RGB only) I get a noticible gamma shift unless I first convert the DVCProHD(YUV) to Animation(RGB) inside FCP. It seems to handle it much better.
I’ve also found the gamma setting in the AJA Control Panel can trip me up while in After Effects if it is not set properly (or in Automatic mode).