[Gareth Randall] “My 2c, for what it’s worth, is that you should reverse-telecine your 60i/29.97 material to 24P (you use Compressor and/or Cinema Tools can do this – sorry, can’t be more specific as I’ve never actually done it myself) before you start editing.
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It sounds like this footage is native 29.97i, not 24p over 29.97i with 3:2 pulldown. Reverse telecine is only for footage that’s 24p shot over 29.97i with 3:2 pulldown. Cinema Tools is not appropriate to use in this case. If the footage is native 29.97i, you’ll need to use Compressor to convert 29.97i to 24p (23.98). I’d recommend converting to ProRes 23.98 and cutting in a ProRes 23.98 sequence.
Enable frame controls in Compressor. Set Output Fields to Progressive, set Deinterlace to Better and set Rate Conversion to Better. Be prepared for long render times. Note that using Best settings for deinterlacing and rate conversion will not offer appreciably better results, and will have staggeringly long render times.
No need to transcode the XDCAM EX stuff, it will play nicely in a ProRes sequence.