did you save the project after deleting the audio file? if not, close it and open it back up without saving.
you could also try to open the backup file although that file does seem to autosave changes in real time.
by default, your backup files are in your application data folder: Local Settings\Application Data\Sony\Vegas Pro\9.0\
it saves them as veg files.
what did you use to change the audio files? perhaps that program has backup files you might be able to restore.
good luck.