Giacomo,
Your postings are a little vague for me, but let me try and explain what I think you need to understand.
When you capture or import media into the Avid, generally, you import into a bin and this gives you master clips (a metadata entity) with related media. Those mediafiles will reside in the mediafiles folder.
In your mediafiles folder, at finder/desktop level, you will see a bunch of XYZ123456.mxf files. You won’t see these filenames in the Media Tool.
When you open the Media Tool you tell the Avid to look at the mediafiles folders and have it tell you what’s there. If you look for master clips, the Media Tool will look for any media that belongs to master clips, and it will display these as master clips (which you then may drag into a bin if you like).
You mention MOV files. These should NOT reside in your Avid MediaFiles folder. But if you have been importing QT movies, you may certainly have master clips named XYZ.mov.
You say that earlier on, you have lost a drive with media. If these were imported MOV’s (as I deduct from what you wrote earlier), the best way to bring them back in is to select the previously imported master clips (now offline), and select Clip->Batch Import. This way, you simply “fill” the metadata entities (master clips) with new media, and all your sequences will link to those instantly.
If you have lost mediafiles for imported MOV’s, and you manually imported those clips again (not with Batch Import), you will probably not have Tapename entries for those original clips, nor for the newly imported clips. And relink works based on Tapename and Timecode. With either one missing, it’s a no-go.
Hope this helps.