Ah – not enough experience to advise.
Chroma key always works for me. I also “Fill” in the motion set-up dialog using set RGB numbers.
But in the Transparency dialog I usually use the eye dropper from a particular point in the scene to find the colour/shade that works the best. Then note the numbers for above.
Chroma is for removing areas of set colour eg putting one object in another background (blue screen)- the others look to alter one colour or grade the original – one application would seem to be the hiding of faces we see in “criminal” videos where the area needs pixelation or dimming. Or we want to “lighten” a face. The provided filters seem to offer these kind of things
I have experimented with the matte box and what I found there, was, that the matte applies to the normal area of the clip, such that if you apply motion the matte will cut parts of the moving image that are not in the “include” area. Wiered – but only because my expectations were different.