I saw a tutorial recommending that I use instances to single out shadows in AE.
Thanks for the advice for multi-pass output. I was able to bring a shadow layer into AE using multi-pass but the shadows aren’t displaying correctly in AE for some reason. Here are a couple of screen shots for my scene setup if it helps.


I know I can get the shadow back if I put the floor and bone on the same layer but then I won’t be able to composite the shadow separately.
It looks like the Global Illumination is rendering differently as well. I’m brand new to this workflow so I’m not sure what I could be missing. Thanks again!