For dropped or time code breaks
user preferences and turn off abort capture on dropped frames
and right under that make sure the drop down is make new clip
for p2, cant you give your clips a name , just like when you log and capture?
i am sure you can give it a reel number, description ect..
i would click your first clips from the browser,
then log it over on the right, then transfer it.
or, you can always order by time code from the browser window in final cut