HDV is upper field so don’t change it to lower because it isn’t. The DV is lower which is also what the sequence setting should be. Firstly check your sequence setting to make sure that it is set to lower, because if it isn’t and the HDV has a shift field filter, then it will be wrong. You didn’t identify which shots have a field error. Perhaps it is the DV and not the HDV. Also there is an opportunity to get the field order wrong making the DVD. Are you monitoring externally on an interlace monitor? Are you sure the error is in FCP or the DVD process which you gave no detail about?
Shift field filter on HDV works. If you are seeing field errors then there is a mismatch going on for sure. Also check that there aren’t two shift field filters on clips or that the filter is there but deselected.
Also it helps to know what version of FCP and details on sequence settings in a post to help take as much guessing out of answering.