For what it’s worth I think I’ve found the solution to my workflow problem: a £150 app called Sync-N-Link
I also came across this solution for doing manual synchronising clip-by-clip and keeping things neat:
Once you’ve imported your audio and video clips, sort them so that they’re in descending order by creation date/time. This will mean one of two things- if you’re files were recorded with time of day TC, they’d look like this
VIDEO CLIP1
AUDIO CLIP1
VIDEO CLIP2
AUDIO CLIP2
VIDEO CLIP3
AUDIO CLIP3
If there was no universal reference TC, then the creation date stamp will still list files in the order they were created- in that case, the list would look like this
VIDEO CLIP1
VIDEO CLIP2
VIDEO CLIP3
AUDIO CLIP1
AUDIO CLIP2
AUDIO CLIP3
In either case it makes it relatively easy to pick out what goes with what, baring any extra audio or video clips from false rolls.
Ok, so set your media filter to HIDE REJECTED. Once you’ve done this, select your first audio and video clip and choose the sync command. Once you’ve done this, while the original audio and video clips are still selected, hit the DELETE key. This will mark the two original files you’ve just sync’d as Rejected and hide them from view (note they’re never deleted and can be viewed at any time by changing the Event Filter view).
This means you’re progressively cleaning up your Event as you go, hiding 2 original clips and leaving only the new Sync Clip visible. This is especially helpful when you have LOTS of clips to sync.
To speed up the process, remember that OPTION+COMMAND+G is the keyboard shortcut for creating Sync Clips. Also, I mapped the keyboard so that COMMAND+O is “Open in Timeline”. After you’ve sync’d 2 clips, I always do this to make sure that the audio and video waveforms are lining up.
Remember that if you sync 2 clips and they turn out NOT to be matching items, you can just UNDO back a couple steps to get you back to before you sync’d the clips.
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