Solution: Select one of the planes that you’re using for external compositing. Open Window/Attribute Manager. Under the “Object” tab, the last value is “Orientation.” Anything you’re using for external compositing should be set to “+Z”.
This is because, as you see in the composting tag attributes, you’re only feeding x and y size data to after effects, so you need the plane to be oriented on the z axis or it will foul things up.
I know this is an old thread, but it’s still came in on top of my Google searches. This little problem caused me several hours of work, so hopefully this will help someone.