Ok forgot to tell you I am on a PC. Now I am not sure if this is the reason or not but I fiqured out that having the edges of each window touching managed to keep the windows in place. So for now it seems fine.
But when I try to go into effect mode, color correction or any other toolset it starts over again. Everything shifts to the left. Still working it out. I will double check the help again and make sure I am not missing anything.