I do this all the time…let’s say it’s a presentation where I have a main camera and two remotes – in an auditorium. My method may be more tedious then others, but it works for me.
I create my sequence in Premiere with the source footage I intend to use as my main shot on track #3, next most on track 2, and least on track one. Then I send to Plural Eyes…and it gives me back the synced sequence. Then I set my in and out points, and with my footage laid out on different tracks, I’ll do general adjustments individually on each clip / track – for example, color correct, brightness etc, then I’ll start playing the timeline and make my cuts accordingly.
If after I make cuts, I want to tweak anything further, its done piece by piece.
I use the audio clip mixer to mute the audio I won’t be using, although I keep it on hand just in case I want some ambient sounds from it, like applause.