Dolby E is an encoding method that gives you a 2 channel PCM stream which contains 6 or 8 channels of audio (16 or 20 bit depth). If you tried to listen to it, there’d be nothing… your AES to analog decoder would be stimied – you’d have to buy a purpose built Dolby E to analog decoder.
You can transport this stream over AES or SDI as long as it remains BIT for BIT accurate. So, in theory, if you digitized a Dolby E track over SDI, you could lay it off to another tape.
BUT: we never do this in our studio. We finish everything on D5 with 8 channels of regular audio and let Dolby labs or the network or the mix house deal withe the encoding. so really all my knowledge is academic and not hands on. I can’t guarantee FCP or the Kona won’t swap some bit information or do some sample rate conversion to the Dolby PCM stream. Good question for Aja tech support!