Solved it!
Do this if you dont want to redo your project.
To get rid of an orphan menu you have to select it, it should appear on the box at the bottom of the flowshart menu, drag it to the flowchart, link it to itself and it will no longer be orphan… just leave it floating in the flowchart unconnected to everything else…
Labrats Multimedia 2D/3D Animation, Composit, Illustration and character design. To see a demo reel, go to http://www.labratsmultimedia.com