Sorry for the delay.
I was working in NDF – it felt like that sort of problem to me too, but unfortunately it wasn’t that simple. I never really figured out what the problem was, but I did manage to find a workaround.
Once I realized that the exported movies were out too, I decided that it must have had something to do with the frame rate. So, I exported the reels again using QT conversion, at 24 fps (23.98 wasn’t an option). Thankfully, this movie was frame accurate, so I imported it back into FCP, put it on a 23.98 timeline and output to tape via the Kona card. I did several tests on each HDSR reel and they seemed to be frame accurate. I haven’t heard anything bad from Technicolor yet, so I’m hoping everything’s been resolved.