Many old-school audio people prefer the sound of a traditional shotgun to any kind of clip-on microphone. But even fielding ONE good boom operator with decent equipment and proper monitoring, etc. is expensive. Providing MULTIPLE good boom operators with proper equipment, etc. just seems beyond reasonable for most of us, at least IMHO.
Not to mention that modern shooting styles with more mobile cameras and less need for big lighting setups, etc. means that we frequently don’t have the luxury of a predictable frame to even know how to position a boom mic, etc.
So much of this depends on exactly what you are shooting and with what resources (budget, personnel, time, equipment), it is almost impossible to discuss this in broad, generic terms.