I’ve also recently had issues with importing using the Canon plugin, both on imports of over 200 clips and less than 10 clips. We’ve made it a rule moving forward to audit the imported clips duration against the original source clips prior to ejecting the card directory.
Not ideal, but it only takes a couple minutes even on large imports. Of course, you could always use an alternative method of converting to ProRes (Compressor or 5DtoRGB app), but the plugin’s other features keep me coming back to it every time.
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Mike Freyder //