You can fix this by setting your field order at exporting to “None (Progressive)”. It fixed the problem in my situation.
In my movie I’ve used a lot of HD images (3000x2000px) which were downscaled, rotated, bounced and moved all over the screen. I’ve tried a lot of different settings like “Field options > Flicker removal”, “Field options > Always Deinterlace” etcetera. It didn’t work.
Only by setting the export settings to “Field order > None (Progressive)” gives me the best result.
I hope you’re helped with it, otherwise maybe someone else is!