Hi Sean. What I was suggesting was a way to automate the entire process:
With your Audio Spectrum layer selected go to the top the screen and select Layer>Auto-trace.
A pop-up box will appear select Time Span = Work Area
Make sure the Preview box at the bottom is checked
Then play with the Options area (I used the Red Channel with Corner Roundness at 0% – the Audio Spectrum I used was standard with some added thickness and 0% softness). You will see a preview of how the masks are looking.
Check the Apply to new layer box and OK.
It will take a short time to create a new layer with moving masks which mimic the spectrum.
It would only take a couple of minutes to try this and it may save you headaches and hours?