Ah, apparently I just need to post to Creative Cow and I’ll think of a solution a day later.
Instead of having a right flank and a left flank, I just precomped the right element and left element together (they are mirror images of eachother), and repeated that precomp along my track. Since I already figured out the auto-orienting issue, this new double-flank precomp automatically facing the correct direction along the track, as well as being appropriately spaced away from it.
Thanks for putting up with my noobiness!