chad,
this has nothing to do with the burning-app where you´ll create your BDs with, this is a spec-thing!
you´ll never get rid of it – I kept it in mind, that (not only) samsung players are doing this! there are a lot more.
BD-spec is way more complicated than DVD-spec, and it´s no usual thing to have a transition from one menu to another or something like this, as BDs have other technical instruments for the menu-selection called IG-stream (interactive streams) that could contain multi-page/multi-layer menus that could have transitions between every single (sub-)page, while the background-video is moving ahead without any interruption. this is possible, as the IG-stream is completly seperated from the background.
you can describe it as two layers, that are completly for it´s own, but working together at the same time. layer0 is the moving (background-)video and layer 1 on top of it is the IG-stream, which contains all the menu-pages with its button.
good example: you should have a look at “ice age – the big melt”, where you could see what I mean.
cheers
danny