The audio played back during the video recording was likely
being clocked slightly off from what the rate on your computer
is interpreting it at. I mean to say that when you run the
same CD on 10 different stand alone players, you often get
10 different actual lengths. This is usually so small of an
issue within the length of a normal soundtrack that it is not
worth mentioning.
I shot about 1 hour of video of some dancers and then retained
the CD which was used for the live sound source. The venue
the dancers were at was so loud with extra noise I wanted to
put the original songs sound track over it. Well, by the end of
each ~ 4 minute song, the audio was out of sync by up to a 750
milliseconds, which is pretty noticable.
What I did was sync the audio in the front of the track, then
looked near the end of the track to figure how much the audio
was in error. I then took the track into Audtion and stretched
it the amount needed to make it line up. The small amount
needed did not cause any artifacts and it let me resample the
audio into 48KHz. Import that back into PPro and you should
be all lined up. It worked for me… I did it about 10 times
in that one DVD project.