Fair enough, but I had been intentionally vague to begin with because this is some murky water. Here goes:
The clip in question is XDCAM EX HD. It was transferred to my RAID drive without issue. In the clip, I had the on camera talent read the one line he was delivering several times until I was happy with it. When I found the best take, I edited the audio only into an existing PPro timeline. The talent was replacing a line from a different actor. The video in this section was a 3-box composite of on screen graphics and different actors. This is why I copy/pasted the video only from PPro to AE. I had an existing comp and simply needed to replace footage with the new actor and render.
When I copy/pasted, the clip appeared in my AE timeline. But, it was out of view of my :30 comp. So, I stretched out the zoom, found the clip (the “active” part of the AE layer), and drug it back into position in the :30 comp. My theory is that this act of dragging back the video in my AE comp is what messed up my audio. Although, I didn’t even have the audio information in AE–just the video! I then applied effects to the video, a mask, and exported the movie. It was then that I noticed the audio was completely botched. It was out of sync, completely chopped up, parts missing, as I said, unusable. The maddening thing is that this wonderful change had somehow rippled all the way back to my original clip on the RAID drive. And yes, that was my only copy of the clip. In a perfect world, I would have backed it up elsewhere, but that didn’t happen this time.
So, that’s about as much detail as I can provide. As I said before, I’ve copy/pasted countless times from PPro to AE, always without incident. This is a first. That’s the detailed information, now I hope I get an accurate response.