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CS3 and ProRes 422
After Effects CS3 does not properly interpret Apple ProRes 422 files during import as 1440×1080 (1.33). Instead it imports it as 1920×1080 (1.0)… which makes ProRes unsuitable as a production codec until AE or Apple fixes this issue.
CS3 fixed the interpretation bug with HDV footage, only to have it affect ProRes. Don’t the people at Apple or Adobe test their products?
Anyway, the workaround is to ditch ProRes and use AIC instead.