There are many possibilities.
1. Dolby-E on 3&4 (like Michael said). This is expensive and limiting. Not only do you need a special hardware encoder. Anyone who wants to access the tape needs a special decoder on their end. Unfortunately it’s standard practice for HDCam delivery to TV stations.
2. Multiple passes or multiple tapes. This is what we do in my business since we deal with short content (like :30 TV spots). Audio requirements for delivery generally require split track audio as well as stereo. So we just make multiple passes. I’ve never seen it done for 5.1. But it’s certainly possible. Just label it and slate it very clearly. You could do Stereo Mix on 1&2, Front L/R on 3&4. For the 2nd pass or tape, do SL, SR, C, LFE.
3. DA88. This is (or at least was) a standard way to deliver 5.1 audio. Stereo on 1-2. Surround on 3-8. It’s a beyond archaic and pointless format now since the advent of the recordable data DVD. But you can always deliver on it and people will know what it is and what it’s for.
4. Data Disc. This is what I try to get away with every time. I put WAV files on a DVD-R. I put on the lablel that the audio starts at 00:59:58:00 and start it with a 2-pop. This can annoy computer-illiterate machine room guys. So make sure you can get away with it first.
Sean